6FI9 image
Deposition Date 2018-01-17
Release Date 2019-02-20
Last Version Date 2024-05-08
Entry Detail
PDB ID:
6FI9
Keywords:
Title:
Crystal Structure of a zinc-responsive MarR family member, Lactococcus lactis ZitR
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 41
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcriptional regulator ZitR
Gene (Uniprot):zitR
Mutagens:S2A, A4R, D8E
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:144
Number of Molecules:8
Biological Source:Lactococcus lactis subsp. cremoris (strain MG1363)
Ligand Molecules
Primary Citation
Biophysical and structural characterization of a zinc-responsive repressor of the MarR superfamily.
PLoS ONE 14 e0210123 e0210123 (2019)
PMID: 30753183 DOI: 10.1371/journal.pone.0210123

Abstact

The uptake of zinc, which is vital in trace amounts, is tightly controlled in bacteria. For this control, bacteria of the Streptococcaceae group use a Zn(II)-binding repressor named ZitR in lactococci and AdcR in streptococci, while other bacteria use a Zur protein of the Ferric uptake regulator (Fur) superfamily. ZitR and AdcR proteins, characterized by a winged helix-turn-helix DNA-binding domain, belong to the multiple antibiotic resistance (MarR) superfamily, where they form a specific group of metallo-regulators. Here, one such Zn(II)-responsive repressor, ZitR of Lactococcus lactis subspecies cremoris strain MG1363, is characterized. Size Exclusion Chromatography-coupled to Multi Angle Light Scattering, Circular Dichroism and Isothermal Titration Calorimetry show that purified ZitR is a stable dimer complexed to Zn(II), which is able to bind its two palindromic operator sites on DNA fragments. The crystal structure of ZitR holo-form (Zn(II)4-ZitR2), has been determined at 2.8 Å resolution. ZitR is the fourth member of the MarR metallo-regulator subgroup whose structure has been determined. The folding of ZitR/AdcR metallo-proteins is highly conserved between both subspecies (cremoris or lactis) in the Lactococcus lactis species and between species (Lactococcus lactis and Streptococcus pneumoniae or pyogenes) in the Streptococcaceae group. It is also similar to the folding of other MarR members, especially in the DNA-binding domain. Our study contributes to better understand the biochemical and structural properties of metallo-regulators in the MarR superfamily.

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