6FGZ image
Entry Detail
PDB ID:
6FGZ
Title:
Cyanidioschyzon merolae Dnm1 (CmDnm1)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-01-11
Release Date:
2018-08-15
Method Details:
Experimental Method:
Resolution:
7.00 Å
R-Value Free:
0.41
R-Value Work:
0.34
R-Value Observed:
0.35
Space Group:
P 62 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Dynamin
Chain IDs:A
Chain Length:774
Number of Molecules:1
Biological Source:Cyanidioschyzon merolae
Ligand Molecules
Primary Citation
Structure of a mitochondrial fission dynamin in the closed conformation.
Nat. Struct. Mol. Biol. 25 722 731 (2018)
PMID: 30061604 DOI: 10.1038/s41594-018-0097-6

Abstact

Dynamin 1-like proteins (DNM1-L) are mechanochemical GTPases that induce membrane fission in mitochondria and peroxisomes. Their mechanism depends on conformational changes driven by nucleotide and lipid cycling. Here we show the crystal structure of a mitochondrial fission dynamin (CmDnm1) from the algae Cyanidioschyzon merolae. Unlike other eukaryotic dynamin structures, CmDnm1 is in a hinge 1 closed conformation, with the GTPase domain compacted against the stalk. Within the crystal, CmDnm1 packs as a diamond-shaped tetramer that is consistent with an inactive off-membrane state. Crosslinking, photoinduced electron transfer assays, and electron microscopy verify these structures. In vitro, CmDnm1 forms concentration-dependent rings and protein-lipid tubes reminiscent of DNM1-L and classical dynamin with hinge 1 open. Our data provides a mechanism for filament collapse and membrane release that may extend to other dynamin family members. Additionally, hinge 1 closing may represent a key conformational change that contributes to membrane fission.

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