6FFY image
Deposition Date 2018-01-09
Release Date 2018-08-01
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6FFY
Keywords:
Title:
Structure of the mouse SorCS2-NGF complex
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VPS10 domain-containing receptor SorCS2
Gene (Uniprot):Sorcs2
Chain IDs:A
Chain Length:972
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-nerve growth factor
Gene (Uniprot):Ngf
Chain IDs:B, C
Chain Length:129
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural insights into SorCS2-Nerve Growth Factor complex formation.
Nat Commun 9 2979 2979 (2018)
PMID: 30061605 DOI: 10.1038/s41467-018-05405-z

Abstact

Signaling of SorCS receptors by proneurotrophin ligands regulates neuronal plasticity, induces apoptosis and is associated with mental disorders. The detailed structure of SorCS2 and its extracellular specificity are unresolved. Here we report crystal structures of the SorCS2-NGF complex and unliganded SorCS2 ectodomain, revealing cross-braced SorCS2 homodimers with two NGF dimers bound in a 2:4 stoichiometry. Five out of six SorCS2 domains directly contribute to dimer formation and a C-terminal membrane proximal unreported domain, with an RNA recognition motif fold, locks the dimer in an intermolecular head-to-tail interaction. The complex structure shows an altered SorCS2 conformation indicating substantial structural plasticity. Both NGF dimer chains interact exclusively with the top face of a SorCS2 β-propeller. Biophysical experiments reveal that NGF, proNGF, and proBDNF bind at this site on SorCS2. Taken together, our data reveal a structurally flexible SorCS2 receptor that employs the large β-propeller as a ligand binding platform.

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Primary Citation of related structures