6FBU image
Deposition Date 2017-12-19
Release Date 2019-01-30
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6FBU
Keywords:
HYDROLASE
Title:
Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrate
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 83333)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.00 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 43 2 2
6FBU validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Endonuclease 8
Gene (Uniprot):nei
Mutations:E2Q, P34T, T112R
Chain IDs:A
Chain Length:262
Number of Molecules:1
Biological Source:Escherichia coli
UniProt ID:P50465 Pfam ID:PF01149, PF06831, PF06827 EC:3.2.2.23
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3')
Chain IDs:B
Chain Length:13
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3')
Chain IDs:C
Chain Length:13
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
ACT
SO4
ZN
Primary Citation
Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrate
To Be Published ? ? ? (?)
Primary Citation of related structures
2EA0
2OPF
2OQ4