6FBM image
Deposition Date 2017-12-19
Release Date 2019-01-30
Last Version Date 2024-05-08
Entry Detail
PDB ID:
6FBM
Keywords:
Title:
Crystal structure of GNIP1Aa from Chromobacterium piscinae
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gram-negative insecticidal protein
Gene (Uniprot):GNIP
Chain IDs:A, B, C, D
Chain Length:536
Number of Molecules:4
Biological Source:Chromobacterium piscinae
Primary Citation
Structure-function characterization of an insecticidal protein GNIP1Aa, a member of an MACPF and beta-tripod families.
Proc.Natl.Acad.Sci.USA 116 2897 2906 (2019)
PMID: 30728296 DOI: 10.1073/pnas.1815547116

Abstact

The crystal structure of the Gram-negative insecticidal protein, GNIP1Aa, has been solved at 2.5-Å resolution. The protein consists of two structurally distinct domains, a MACPF (membrane attack complex/PerForin) and a previously uncharacterized type of domain. GNIP1Aa is unique in being a prokaryotic MACPF member to have both its structure and function identified. It was isolated from a Chromobacterium piscinae strain and is specifically toxic to Diabrotica virgifera virgifera larvae upon feeding. In members of the MACPF family, the MACPF domain has been shown to be important for protein oligomerization and formation of transmembrane pores, while accompanying domains define the specificity of the target of the toxicity. In GNIP1Aa the accompanying C-terminal domain has a unique fold composed of three pseudosymmetric subdomains with shared sequence similarity, a feature not obvious from the initial sequence examination. Our analysis places this domain into a protein family, named here β-tripod. Using mutagenesis, we identified functionally important regions in the β-tripod domain, which may be involved in target recognition.

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