6FAN image
Entry Detail
PDB ID:
6FAN
Title:
Crystal structure of putative CooT from Carboxydothermus hydrogenoformans
Biological Source:
PDB Version:
Deposition Date:
2017-12-15
Release Date:
2018-11-28
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:CooT
Chain IDs:A, B, C, D, E, F
Chain Length:63
Number of Molecules:6
Biological Source:Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)
Primary Citation
Biophysical and structural characterization of the putative nickel chaperone CooT from Carboxydothermus hydrogenoformans.
J.Biol.Inorg.Chem. 23 809 817 (2018)
PMID: 29882029 DOI: 10.1007/s00775-018-1576-2

Abstact

Carboxydothermus hydrogenoformans is a model microorganism for the study of [NiFe]-CODH, a key enzyme of carbon cycle in anaerobic microorganisms. The enzyme possesses a unique active site (C-cluster), constituted of a distorted [NiFe3S4] cubane linked to a mononuclear Fe(II) center. Both the biogenesis of the C-cluster and the activation of CODH by nickel insertion remain unclear. Among the three accessory proteins thought to play a role in this latter step (CooC, CooJ, and CooT), CooT is identified as a nickel chaperone involved in CODH maturation in Rhodospirillum rubrum. Here, we structurally and biophysically characterized a putative CooT protein present in C. hydrogenoformans (pChCooT). Despite the low sequence homologies between CooT from R. rubrum (RrCooT) and pChCooT (19% sequence identity), the two proteins share several similarities, such as their overall structure and a solvent-exposed Ni(II)-binding site at the dimer interface. Moreover, the X-ray structure of pChCooT reveals the proximity between the histidine 55, a potential nickel-coordinating residue, and the cysteine 2, a highly conserved key residue in Ni(II)-binding.

Legend

Protein

Chemical

Disease

Primary Citation of related structures