ISDA

Deposition Date 2017-12-13

Release Date 2019-06-26

Last Version Date 2024-01-17

Entry Detail

PDB ID:

6F8J

Keywords:

ISOMERASE

Title:

Crystal Structure of E. coli GyraseB 24kDa in complex with 6-[(ethylcarbamoyl)amino]-4-(1H-pyrazol-1-yl)-N-(pyridin-3-yl)pyridine-3-carboxamide

Biological Source:

Source Organism:

Escherichia coli O157:H7 (Taxon ID: 83334)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.95 Å

R-Value Free:

0.23

R-Value Work:

0.19

R-Value Observed:

0.20

Space Group:

P 32 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA gyrase subunit B
Chain IDs:A
Chain Length:221
Number of Molecules:1
Biological Source:Escherichia coli O157:H7

UniProt ID:P0AES6 Pfam ID:PF02518

Ligand Molecules

CZ5

Primary Citation

New insights into the binding mode of pyridine-3-carboxamide inhibitors of E. coli DNA gyrase.

Narramore, S, Stevenson, C.E.M, Maxwell, A, Lawson, D.M, Fishwick, C.W.G.Show

Bioorg.Med.Chem. 27 3546 3550 (2019)

PMID: 31257079 DOI: 10.1016/j.bmc.2019.06.015

Abstact

Previously we have reported on a series of pyridine-3-carboxamide inhibitors of DNA gyrase and DNA topoisomerase IV that were designed using a computational de novo design approach and which showed promising antibacterial properties. Herein we describe the synthesis of additional examples from this series aimed specifically at DNA gyrase, along with crystal structures confirming the predicted mode of binding and in vitro ADME data which describe the drug-likeness of these compounds.

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Primary Citation of related structures