ISDA

Entry Detail

PDB ID:

6F8J

Keywords:

Title:

Crystal Structure of E. coli GyraseB 24kDa in complex with 6-[(ethylcarbamoyl)amino]-4-(1H-pyrazol-1-yl)-N-(pyridin-3-yl)pyridine-3-carboxamide

Biological Source:

Source Organism:

Escherichia coli O157:H7

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2017-12-13

Release Date:

2019-06-26

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.95 Å

R-Value Free:

0.23

R-Value Work:

0.19

R-Value Observed:

0.20

Space Group:

P 32 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:DNA gyrase subunit B
Chain IDs:A
Chain Length:221
Number of Molecules:1
Biological Source:Escherichia coli O157:H7

UniProt ID:P0AES6 Pfam ID:PF02518 EC:5.6.2.2

Ligand Molecules

CZ5

Primary Citation

New insights into the binding mode of pyridine-3-carboxamide inhibitors of E. coli DNA gyrase.

Narramore, S, Stevenson, C.E.M, Maxwell, A, Lawson, D.M, Fishwick, C.W.G.Show

Bioorg.Med.Chem. 27 3546 3550 (2019)

PMID: 31257079 DOI: 10.1016/j.bmc.2019.06.015

Abstact

Previously we have reported on a series of pyridine-3-carboxamide inhibitors of DNA gyrase and DNA topoisomerase IV that were designed using a computational de novo design approach and which showed promising antibacterial properties. Herein we describe the synthesis of additional examples from this series aimed specifically at DNA gyrase, along with crystal structures confirming the predicted mode of binding and in vitro ADME data which describe the drug-likeness of these compounds.

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Primary Citation of related structures