6F6F image
Deposition Date 2017-12-05
Release Date 2018-07-04
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6F6F
Keywords:
Title:
R2-like ligand-binding oxidase V72I mutant with aerobically reconstituted Mn/Fe cofactor
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.79 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribonucleotide reductase small subunit
Gene (Uniprot):GK2771
Mutagens:V72I
Chain IDs:A
Chain Length:316
Number of Molecules:1
Biological Source:Geobacillus kaustophilus (strain HTA426)
Primary Citation
Ether cross-link formation in the R2-like ligand-binding oxidase.
J. Biol. Inorg. Chem. 23 879 886 (2018)
PMID: 29946980 DOI: 10.1007/s00775-018-1583-3

Abstact

R2-like ligand-binding oxidases contain a dinuclear metal cofactor which can consist either of two iron ions or one manganese and one iron ion, but the heterodinuclear Mn/Fe cofactor is the preferred assembly in the presence of MnII and FeII in vitro. We have previously shown that both types of cofactor are capable of catalyzing formation of a tyrosine-valine ether cross-link in the protein scaffold. Here we demonstrate that Mn/Fe centers catalyze cross-link formation more efficiently than Fe/Fe centers, indicating that the heterodinuclear cofactor is the biologically relevant one. We further explore the chemical potential of the Mn/Fe cofactor by introducing mutations at the cross-linking valine residue. We find that cross-link formation is possible also to the tertiary beta-carbon in an isoleucine, but not to the secondary beta-carbon or tertiary gamma-carbon in a leucine, nor to the primary beta-carbon of an alanine. These results illustrate that the reactivity of the cofactor is highly specific and directed.

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Primary Citation of related structures
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