6F45 image
Deposition Date 2017-11-29
Release Date 2018-08-01
Last Version Date 2024-05-08
Entry Detail
PDB ID:
6F45
Keywords:
Title:
Crystal structure of the gp37-gp38 adhesin tip complex of the bacteriophage S16 long tail fiber
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Long tail fiber distal subunit
Chain IDs:B (auth: A), C (auth: B), D (auth: C)
Chain Length:204
Number of Molecules:3
Biological Source:Salmonella phage vB_SenMS16
Polymer Type:polypeptide(L)
Molecule:Receptor recognition protein
Chain IDs:A (auth: D)
Chain Length:249
Number of Molecules:1
Biological Source:Salmonella phage vB_SenMS16
Primary Citation
Salmonella Phage S16 Tail Fiber Adhesin Features a Rare Polyglycine Rich Domain for Host Recognition.
Structure 26 1573 1582.e4 (2018)
PMID: 30244968 DOI: 10.1016/j.str.2018.07.017

Abstact

The ability of phages to infect specific bacteria has led to their exploitation as bio-tools for bacterial remediation and detection. Many phages recognize bacterial hosts via adhesin tips of their long tail fibers (LTFs). Adhesin sequence plasticity modulates receptor specificity, and thus primarily defines a phage's host range. Here we present the crystal structure of an adhesin (gp38) attached to a trimeric β-helical tip (gp37) from the Salmonella phage S16 LTF. Gp38 contains rare polyglycine type II helices folded into a packed lattice, herein designated "PGII sandwich." Sequence variability within the domain is limited to surface-exposed helices and distal loops that form putative receptor-binding sites. In silico analyses revealed a prevalence of the adhesin architecture among T-even phages, excluding the archetypal T4 phage. Overall, S16 LTF provides a valuable model for understanding binding mechanisms of phage adhesins, and for engineering of phage adhesins with expandable or modulated host ranges.

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