6F3C image
Deposition Date 2017-11-28
Release Date 2019-05-29
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6F3C
Keywords:
Title:
The cytotoxic [Pt(H2bapbpy)] platinum complex interacting with the CGTACG hexamer
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*TP*AP*CP*G)-3')
Chain IDs:A (auth: B), B (auth: D)
Chain Length:6
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*TP*AP*CP*G)-3')
Chain IDs:C, D (auth: A)
Chain Length:5
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Induction of a Four-Way Junction Structure in the DNA Palindromic Hexanucleotide 5'-d(CGTACG)-3' by a Mononuclear Platinum Complex.
Angew.Chem.Int.Ed.Engl. 58 9378 9382 (2019)
PMID: 31046177 DOI: 10.1002/anie.201814532

Abstact

Four-way junctions (4WJs) are supramolecular DNA assemblies comprising four interacting DNA strands that in biology are involved in DNA-damage repair. In this study, a new mononuclear platinum(II) complex 1 was prepared that is capable of driving the crystallization of the DNA oligomer 5'-d(CGTACG)-3' specifically into a 4WJ-like motif. In the crystal structure of the 1-CGTACG adduct, the distorted-square-planar platinum complex binds to the core of the 4WJ-like motif through π-π stacking and hydrogen bonding, without forming any platinum-nitrogen coordination bonds. Our observations suggest that the specific molecular properties of the metal complex are crucially responsible for triggering the selective assembly of this peculiar DNA superstructure.

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