6F1T image
Deposition Date 2017-11-23
Release Date 2018-01-17
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6F1T
Keywords:
MOTOR PROTEIN
Title:
Cryo-EM structure of two dynein tail domains bound to dynactin and BICDR1
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Sus scrofa (Taxon ID: 9823)
Host Organism:
Spodoptera frugiperda
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
6F1T validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ARP1 actin related protein 1 homolog A
Gene (Uniprot):ACTR1A
Chain IDs:A, B, C, D, E, F, G, I
Chain Length:66
Number of Molecules:8
Biological Source:Sus scrofa
UniProt ID:F2Z5G5 Pfam ID:PF00022
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1
Gene (Uniprot):ACTB
Chain IDs:H
Chain Length:612
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:Q6QAQ1 Pfam ID:PF00022
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin related protein 10 homolog
Gene (Uniprot):ACTR10
Chain IDs:J
Chain Length:390
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LHK5 Pfam ID:PF00022
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capping protein (Actin filament) muscle Z-line, alpha 1
Gene (Uniprot):CAPZA1
Chain IDs:K
Chain Length:96
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0PFK5 Pfam ID:PF01267
Protein Blast
Polymer Type:polypeptide(L)
Molecule:F-actin capping protein beta subunit
Chain IDs:L
Chain Length:272
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0PFK7 Pfam ID:PF01115
Polymer Type:polypeptide(L)
Molecule:Dynactin Subunit 2
Chain IDs:M
Chain Length:1053
Number of Molecules:1
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Dynactin Subunit 2
Chain IDs:N
Chain Length:618
Number of Molecules:1
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Dynactin Subunit 3
Chain IDs:O, P
Chain Length:65
Number of Molecules:2
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Dynactin Subunit 2
Chain IDs:Q, R
Chain Length:87
Number of Molecules:2
Biological Source:Sus scrofa
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin 6
Gene (Uniprot):DCTN6
Chain IDs:S (auth: U)
Chain Length:190
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:D0G6S1
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 5
Gene (Uniprot):DCTN5
Chain IDs:T (auth: V)
Chain Length:182
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A286ZK88 Pfam ID:PF21711
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BICD family-like cargo adapter 1,BICD family-like cargo adapter 1,BICD family-like cargo adapter 1,BICDR-1
Gene (Uniprot):Bicdl1
Chain IDs:U (auth: X)
Chain Length:392
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:A0JNT9
Polymer Type:polypeptide(L)
Molecule:Dynactin Subunit 4
Chain IDs:V (auth: Y)
Chain Length:263
Number of Molecules:1
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Dynactin Subunit 1
Chain IDs:W (auth: Z)
Chain Length:52
Number of Molecules:1
Biological Source:Sus scrofa
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 2
Chain IDs:X (auth: a)
Chain Length:66
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A5G2QD80
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 2
Chain IDs:Y (auth: b)
Chain Length:89
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A5G2QD80
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 2
Chain IDs:Z (auth: c)
Chain Length:376
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A5G2QD80
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 2
Chain IDs:AA (auth: d)
Chain Length:376
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A5G2QD80
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Dynein Heavy Chain,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Dynein Heavy Chain,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1
Gene (Uniprot):DYNC1H1
Chain IDs:BA (auth: e), CA (auth: f), JA (auth: m), KA (auth: n)
Chain Length:1053
Number of Molecules:4
Biological Source:Homo sapiens
UniProt ID:Q14204 Pfam ID:PF08385
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 intermediate chain 2
Gene (Uniprot):DYNC1I2
Chain IDs:DA (auth: g), EA (auth: h), LA (auth: o), MA (auth: p)
Chain Length:376
Number of Molecules:4
Biological Source:Homo sapiens
UniProt ID:Q13409 Pfam ID:PF11540, PF00400
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 light intermediate chain 2
Gene (Uniprot):DYNC1LI2
Chain IDs:FA (auth: i), GA (auth: j), NA (auth: q), OA (auth: r)
Chain Length:376
Number of Molecules:4
Biological Source:Homo sapiens
UniProt ID:O43237 Pfam ID:PF05783
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynein light chain roadblock-type 1
Gene (Uniprot):DYNLRB1
Chain IDs:HA (auth: k), IA (auth: l), PA (auth: s), QA (auth: t)
Chain Length:96
Number of Molecules:4
Biological Source:Homo sapiens
UniProt ID:Q9NP97 Pfam ID:PF03259
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BICD family-like cargo adapter 1,BICD family-like cargo adapter 1,BICD family-like cargo adapter 1
Gene (Uniprot):Bicdl1
Chain IDs:RA (auth: x)
Chain Length:392
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:A0JNT9
Polymer Type:polypeptide(L)
Molecule:Dynactin Subunit 1
Chain IDs:SA (auth: z)
Chain Length:52
Number of Molecules:1
Biological Source:Sus scrofa
Ligand Molecules
ADP
ATP
Primary Citation
Cryo-EM shows how dynactin recruits two dyneins for faster movement.
Nature 554 202 206 (2018)
PMID: 29420470 DOI: 10.1038/nature25462

Abstact

Dynein and its cofactor dynactin form a highly processive microtubule motor in the presence of an activating adaptor, such as BICD2. Different adaptors link dynein and dynactin to distinct cargoes. Here we use electron microscopy and single-molecule studies to show that adaptors can recruit a second dynein to dynactin. Whereas BICD2 is biased towards recruiting a single dynein, the adaptors BICDR1 and HOOK3 predominantly recruit two dyneins. We find that the shift towards a double dynein complex increases both the force and speed of the microtubule motor. Our 3.5 Å resolution cryo-electron microscopy reconstruction of a dynein tail-dynactin-BICDR1 complex reveals how dynactin can act as a scaffold to coordinate two dyneins side-by-side. Our work provides a structural basis for understanding how diverse adaptors recruit different numbers of dyneins and regulate the motile properties of the dynein-dynactin transport machine.

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Disease

Primary Citation of related structures
6F1T