6EZO image
Deposition Date 2017-11-16
Release Date 2018-03-28
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6EZO
Title:
Eukaryotic initiation factor EIF2B in complex with ISRIB
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit alpha
Gene (Uniprot):EIF2B1
Chain IDs:A, B
Chain Length:305
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit beta
Gene (Uniprot):EIF2B2
Mutagens:3xFLAG inserted at position +4 of the protein sequence
Chain IDs:C, D
Chain Length:373
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit gamma
Gene (Uniprot):EIF2B3
Chain IDs:E, F
Chain Length:452
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit delta
Gene (Uniprot):EIF2B4
Chain IDs:G, H
Chain Length:523
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Human eukaryotic initiation factor EIF2B epsilon subunits
Gene (Uniprot):EIF2B5
Chain IDs:I, J
Chain Length:721
Number of Molecules:2
Biological Source:Homo Sapiens
Ligand Molecules
Primary Citation
Binding of ISRIB reveals a regulatory site in the nucleotide exchange factor eIF2B.
Science 359 1533 1536 (2018)
PMID: 29599245 DOI: 10.1126/science.aar5129

Abstact

The integrated stress response (ISR) is a conserved translational and transcriptional program affecting metabolism, memory, and immunity. The ISR is mediated by stress-induced phosphorylation of eukaryotic translation initiation factor 2α (eIF2α) that attenuates the guanine nucleotide exchange factor eIF2B. A chemical inhibitor of the ISR, ISRIB, reverses the attenuation of eIF2B by phosphorylated eIF2α, protecting mice from neurodegeneration and traumatic brain injury. We describe a 4.1-angstrom-resolution cryo-electron microscopy structure of human eIF2B with an ISRIB molecule bound at the interface between the β and δ regulatory subunits. Mutagenesis of residues lining this pocket altered the hierarchical cellular response to ISRIB analogs in vivo and ISRIB binding in vitro. Our findings point to a site in eIF2B that can be exploited by ISRIB to regulate translation.

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Primary Citation of related structures
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