6EZN image
Deposition Date 2017-11-16
Release Date 2018-01-17
Last Version Date 2024-12-11
Entry Detail
PDB ID:
6EZN
Title:
Cryo-EM structure of the yeast oligosaccharyltransferase (OST) complex
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
Gene (Uniprot):OST1
Chain IDs:A
Chain Length:476
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2
Gene (Uniprot):OST2
Chain IDs:B
Chain Length:130
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3
Gene (Uniprot):OST3
Chain IDs:C
Chain Length:350
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST4
Gene (Uniprot):OST4
Chain IDs:D
Chain Length:36
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST5
Gene (Uniprot):OST5
Chain IDs:E
Chain Length:86
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3
Gene (Uniprot):STT3
Chain IDs:F
Chain Length:718
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1
Gene (Uniprot):WBP1
Chain IDs:G
Chain Length:430
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1
Gene (Uniprot):SWP1
Chain IDs:H
Chain Length:286
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
Structure of the yeast oligosaccharyltransferase complex gives insight into eukaryotic N-glycosylation.
Science 359 545 550 (2018)
PMID: 29301962 DOI: 10.1126/science.aar5140

Abstact

Oligosaccharyltransferase (OST) is an essential membrane protein complex in the endoplasmic reticulum, where it transfers an oligosaccharide from a dolichol-pyrophosphate-activated donor to glycosylation sites of secretory proteins. Here we describe the atomic structure of yeast OST determined by cryo-electron microscopy, revealing a conserved subunit arrangement. The active site of the catalytic STT3 subunit points away from the center of the complex, allowing unhindered access to substrates. The dolichol-pyrophosphate moiety binds to a lipid-exposed groove of STT3, whereas two noncatalytic subunits and an ordered N-glycan form a membrane-proximal pocket for the oligosaccharide. The acceptor polypeptide site faces an oxidoreductase domain in stand-alone OST complexes or is immediately adjacent to the translocon, suggesting how eukaryotic OSTs efficiently glycosylate a large number of polypeptides before their folding.

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