6EY0 image
Deposition Date 2017-11-10
Release Date 2018-02-07
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6EY0
Title:
N-terminal part (residues 30-212) of PorM with the llama nanobody nb01
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:T9SS component cytoplasmic membrane protein PorM
Chain IDs:A, B, C, D
Chain Length:197
Number of Molecules:4
Biological Source:Porphyromonas gingivalis
Polymer Type:polypeptide(L)
Molecule:llama nanobody nb01
Chain IDs:E, G, H
Chain Length:134
Number of Molecules:3
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Molecule:llama nanobody nb01
Chain IDs:F
Chain Length:136
Number of Molecules:1
Biological Source:Lama glama
Primary Citation
Type IX secretion system PorM and gliding machinery GldM form arches spanning the periplasmic space.
Nat Commun 9 429 429 (2018)
PMID: 29382829 DOI: 10.1038/s41467-017-02784-7

Abstact

Type IX secretion system (T9SS), exclusively present in the Bacteroidetes phylum, has been studied mainly in Flavobacterium johnsoniae and Porphyromonas gingivalis. Among the 18 genes, essential for T9SS function, a group of four, porK-N (P. gingivalis) or gldK-N (F. johnsoniae) belongs to a co-transcribed operon that expresses the T9SS core membrane complex. The central component of this complex, PorM (or GldM), is anchored in the inner membrane by a trans-membrane helix and interacts through the outer membrane PorK-N complex. There is a complete lack of available atomic structures for any component of T9SS, including the PorKLMN complex. Here we report the crystal structure of the GldM and PorM periplasmic domains. Dimeric GldM and PorM, each contain four domains of ~180-Å length that span most of the periplasmic space. These and previously reported results allow us to propose a model of the T9SS core membrane complex as well as its functional behavior.

Legend

Protein

Chemical

Disease

Primary Citation of related structures