6ETJ image
Entry Detail
PDB ID:
6ETJ
Title:
HUMAN PFKFB3 IN COMPLEX WITH KAN0438241
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-10-26
Release Date:
2018-11-07
Method Details:
Experimental Method:
Resolution:
2.51 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3
Chain IDs:A
Chain Length:520
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
NEP A HIS modified residue
Primary Citation
Targeting PFKFB3 radiosensitizes cancer cells and suppresses homologous recombination.
Nat Commun 9 3872 3872 (2018)
PMID: 30250201 DOI: 10.1038/s41467-018-06287-x

Abstact

The glycolytic PFKFB3 enzyme is widely overexpressed in cancer cells and an emerging anti-cancer target. Here, we identify PFKFB3 as a critical factor in homologous recombination (HR) repair of DNA double-strand breaks. PFKFB3 rapidly relocates into ionizing radiation (IR)-induced nuclear foci in an MRN-ATM-γH2AX-MDC1-dependent manner and co-localizes with DNA damage and HR repair proteins. PFKFB3 relocalization is critical for recruitment of HR proteins, HR activity, and cell survival upon IR. We develop KAN0438757, a small molecule inhibitor that potently targets PFKFB3. Pharmacological PFKFB3 inhibition impairs recruitment of ribonucleotide reductase M2 and deoxynucleotide incorporation upon DNA repair, and reduces dNTP levels. Importantly, KAN0438757 induces radiosensitization in transformed cells while leaving non-transformed cells unaffected. In summary, we identify a key role for PFKFB3 enzymatic activity in HR repair and present KAN0438757, a selective PFKFB3 inhibitor that could potentially be used as a strategy for the treatment of cancer.

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Primary Citation of related structures