6ET7 image
Deposition Date 2017-10-25
Release Date 2018-06-13
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6ET7
Keywords:
Title:
Activated heterodimer of the bacteriophytochrome regulated diguanylyl cyclase variant - S505V A526V - from Idiomarina species A28L
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Diguanylate cyclase (GGDEF) domain-containing protein
Gene (Uniprot):A28LD_0430
Mutagens:S505V, A526V
Chain IDs:A, B
Chain Length:685
Number of Molecules:2
Biological Source:Idiomarina sp. A28L
Primary Citation
Asymmetric activation mechanism of a homodimeric red light regulated photoreceptor.
Elife 7 ? ? (2018)
PMID: 29869984 DOI: 10.7554/eLife.34815

Abstact

Organisms adapt to environmental cues using diverse signaling networks. In order to sense and integrate light for regulating various biological functions, photoreceptor proteins have evolved in a modular way. This modularity is targeted in the development of optogenetic tools enabling the control of cellular events with high spatiotemporal precision. However, the limited understanding of signaling mechanisms impedes the rational design of innovative photoreceptor-effector couples. Here, we reveal molecular details of signal transduction in phytochrome-regulated diguanylyl cyclases. Asymmetric structural changes of the full-length homodimer result in a functional heterodimer featuring two different photoactivation states. Structural changes around the cofactors result in a quasi-translational rearrangement of the distant coiled-coil sensor-effector linker. Eventually, this regulates enzymatic activity by modulating the dimer interface of the output domains. Considering the importance of phytochrome heterodimerization in plant signaling, our mechanistic details of asymmetric photoactivation in a bacterial system reveal novel aspects of the evolutionary adaptation of phytochromes.

Legend

Protein

Chemical

Disease

Primary Citation of related structures