6ET5 image
Entry Detail
PDB ID:
6ET5
EMDB ID:
Keywords:
Title:
Reaction centre light harvesting complex 1 from Blc. virids
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2017-10-25
Release Date:
2018-04-11
Method Details:
Experimental Method:
Resolution:
2.87 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Light-harvesting protein B-1015 beta chain
Chain IDs:F (auth: 1), X (auth: G), Y (auth: N), Z (auth: Q), AA (auth: T), BA (auth: W), CA (auth: Z), DA (auth: c), EA (auth: f), FA (auth: i), GA (auth: l), HA (auth: o), IA (auth: r), JA (auth: u), KA (auth: x), LA (auth: 4), MA (auth: 7)
Chain Length:56
Number of Molecules:17
Biological Source:Blastochloris viridis
Polymer Type:polypeptide(L)
Description:Light-harvesting protein B-1015 gamma chain
Chain IDs:G (auth: 2), NA (auth: I), OA (auth: O), PA (auth: R), QA (auth: U), RA (auth: X), SA (auth: a), TA (auth: d), UA (auth: g), VA (auth: j), WA (auth: m), XA (auth: p), YA (auth: s), ZA (auth: v), AB (auth: y), BB (auth: 5)
Chain Length:24
Number of Molecules:16
Biological Source:Blastochloris viridis
Polymer Type:polypeptide(L)
Description:Photosynthetic reaction center cytochrome c subunit
Chain IDs:A (auth: C)
Chain Length:333
Number of Molecules:1
Biological Source:Blastochloris viridis
Polymer Type:polypeptide(L)
Description:Reaction center protein H chain
Chain IDs:D (auth: H)
Chain Length:59
Number of Molecules:1
Biological Source:Blastochloris viridis
Polymer Type:polypeptide(L)
Description:Reaction center protein L chain
Chain IDs:B (auth: L)
Chain Length:274
Number of Molecules:1
Biological Source:Blastochloris viridis
Polymer Type:polypeptide(L)
Description:Reaction center protein M chain
Chain IDs:C (auth: M)
Chain Length:24
Number of Molecules:1
Biological Source:Blastochloris viridis
Polymer Type:polypeptide(L)
Description:Light-harvesting protein B-1015 alpha chain
Chain IDs:E (auth: z), H (auth: F), I (auth: K), J (auth: P), K (auth: S), L (auth: V), M (auth: Y), N (auth: b), O (auth: e), P (auth: h), Q (auth: k), R (auth: n), S (auth: q), T (auth: t), U (auth: w), V (auth: 3), W (auth: 6)
Chain Length:59
Number of Molecules:17
Biological Source:Blastochloris viridis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME D MET modified residue
Primary Citation
Cryo-EM structure of the Blastochloris viridis LH1-RC complex at 2.9 angstrom.
Nature 556 203 208 (2018)
PMID: 29618818 DOI: 10.1038/s41586-018-0014-5

Abstact

The light-harvesting 1-reaction centre (LH1-RC) complex is a key functional component of bacterial photosynthesis. Here we present a 2.9 Å resolution cryo-electron microscopy structure of the bacteriochlorophyll b-based LH1-RC complex from Blastochloris viridis that reveals the structural basis for absorption of infrared light and the molecular mechanism of quinone migration across the LH1 complex. The triple-ring LH1 complex comprises a circular array of 17 β-polypeptides sandwiched between 17 α- and 16 γ-polypeptides. Tight packing of the γ-apoproteins between β-polypeptides collectively interlocks and stabilizes the LH1 structure; this, together with the short Mg-Mg distances of bacteriochlorophyll b pairs, contributes to the large redshift of bacteriochlorophyll b absorption. The 'missing' 17th γ-polypeptide creates a pore in the LH1 ring, and an adjacent binding pocket provides a folding template for a quinone, Q P, which adopts a compact, export-ready conformation before passage through the pore and eventual diffusion to the cytochrome bc 1 complex.

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Primary Citation of related structures