6ES1 image
Deposition Date 2017-10-19
Release Date 2018-04-25
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6ES1
Keywords:
Title:
Crystal structure of the binding domain from botulinum neurotoxin A2 bound to extracellular domain of human receptor SV2C
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Botulinum neurotoxin type A
Gene (Uniprot):botA
Chain IDs:A
Chain Length:445
Number of Molecules:1
Biological Source:Clostridium botulinum
Polymer Type:polypeptide(L)
Molecule:Synaptic vesicle glycoprotein 2C
Gene (Uniprot):SV2C
Chain IDs:B
Chain Length:117
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Crystal Structure of Botulinum Neurotoxin A2 in Complex with the Human Protein Receptor SV2C Reveals Plasticity in Receptor Binding.
Toxins (Basel) 10 ? ? (2018)
PMID: 29649119 DOI: 10.3390/toxins10040153

Abstact

Botulinum neurotoxins (BoNTs) are a family of highly dangerous bacterial toxins, with seven major serotypes (BoNT/A-G). Members of BoNTs, BoNT/A1 and BoNT/B1, have been utilized to treat an increasing number of medical conditions. The clinical trials are ongoing for BoNT/A2, another subtype of BoNT/A, which showed promising therapeutic properties. Both BoNT/A1 and BoNT/A2 utilize three isoforms of synaptic vesicle protein SV2 (SV2A, B, and C) as their protein receptors. We here present a high resolution (2.0 Å) co-crystal structure of the BoNT/A2 receptor-binding domain in complex with the human SV2C luminal domain. The structure is similar to previously reported BoNT/A-SV2C complexes, but a shift of the receptor-binding segment in BoNT/A2 rotates SV2C in two dimensions giving insight into the dynamic behavior of the interaction. Small differences in key residues at the binding interface may influence the binding to different SV2 isoforms, which may contribute to the differences between BoNT/A1 and BoNT/A2 observed in the clinic.

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Primary Citation of related structures