6EQS image
Entry Detail
PDB ID:
6EQS
Title:
Human Sirt5 in complex with stalled peptidylimidate intermediate of inhibitory compound 29
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-10-15
Release Date:
2017-11-01
Method Details:
Experimental Method:
Resolution:
1.32 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NAD-dependent protein deacylase sirtuin-5, mitochondrial
Chain IDs:A, B, C, D
Chain Length:275
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Mechanism-Based Inhibitors of the Human Sirtuin 5 Deacylase: Structure-Activity Relationship, Biostructural, and Kinetic Insight.
Angew. Chem. Int. Ed. Engl. 56 14836 14841 (2017)
PMID: 29044784 DOI: 10.1002/anie.201709050

Abstact

The sirtuin enzymes are important regulatory deacylases in a variety of biochemical contexts and may therefore be potential therapeutic targets through either activation or inhibition by small molecules. Here, we describe the discovery of the most potent inhibitor of sirtuin 5 (SIRT5) reported to date. We provide rationalization of the mode of binding by solving co-crystal structures of selected inhibitors in complex with both human and zebrafish SIRT5, which provide insight for future optimization of inhibitors with more "drug-like" properties. Importantly, enzyme kinetic evaluation revealed a slow, tight-binding mechanism of inhibition, which is unprecedented for SIRT5. This is important information when applying inhibitors to probe mechanisms in biology.

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