6EQO image
Deposition Date 2017-10-13
Release Date 2018-10-24
Last Version Date 2024-05-08
Entry Detail
PDB ID:
6EQO
Keywords:
Title:
Tri-functional propionyl-CoA synthase of Erythrobacter sp. NAP1 with bound NADP+ and phosphomethylphosphonic acid adenylate ester
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Acetyl-coenzyme A synthetase
Gene (Uniprot):NAP1_02725
Chain IDs:A, B
Chain Length:1850
Number of Molecules:2
Biological Source:Erythrobacter sp. NAP1
Primary Citation
The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite.
Nat. Chem. Biol. 14 1127 1132 (2018)
PMID: 30374166 DOI: 10.1038/s41589-018-0153-x

Abstact

Cells must cope with toxic or reactive intermediates formed during metabolism. One coping strategy is to sequester reactions that produce such intermediates within specialized compartments or tunnels connecting different active sites. Here, we show that propionyl-CoA synthase (PCS), an ∼ 400-kDa homodimer, three-domain fusion protein and the key enzyme of the 3-hydroxypropionate bi-cycle for CO2 fixation, sequesters its reactive intermediate acrylyl-CoA. Structural analysis showed that PCS forms a multicatalytic reaction chamber. Kinetic analysis suggested that access to the reaction chamber and catalysis are synchronized by interdomain communication. The reaction chamber of PCS features three active sites and has a volume of only 33 nm3. As one of the smallest multireaction chambers described in biology, PCS may inspire the engineering of a new class of dynamically regulated nanoreactors.

Legend

Protein

Chemical

Disease

Primary Citation of related structures