6EQA image
Entry Detail
PDB ID:
6EQA
Keywords:
Title:
HLA class I histocompatibility antigen
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-10-12
Release Date:
2018-10-10
Method Details:
Experimental Method:
Resolution:
3.16 Å
R-Value Free:
0.26
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HLA class I histocompatibility antigen, A-2 alpha chain
Chain IDs:A
Chain Length:276
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ALA-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL
Chain IDs:C
Chain Length:9
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Mel5 TCR, alpha chain
Chain IDs:D
Chain Length:194
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Mel5 TCR, beta chain
Chain IDs:E
Chain Length:244
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
TCR-induced alteration of primary MHC peptide anchor residue.
Eur.J.Immunol. 49 1052 1066 (2019)
PMID: 31091334 DOI: 10.1002/eji.201948085

Abstact

The HLA-A*02:01-restricted decapeptide EAAGIGILTV, derived from melanoma antigen recognized by T-cells-1 (MART-1) protein, represents one of the best-studied tumor associated T-cell epitopes, but clinical results targeting this peptide have been disappointing. This limitation may reflect the dominance of the nonapeptide, AAGIGILTV, at the melanoma cell surface. The decapeptide and nonapeptide are presented in distinct conformations by HLA-A*02:01 and TCRs from clinically relevant T-cell clones recognize the nonapeptide poorly. Here, we studied the MEL5 TCR that potently recognizes the nonapeptide. The structure of the MEL5-HLA-A*02:01-AAGIGILTV complex revealed an induced fit mechanism of antigen recognition involving altered peptide-MHC anchoring. This "flexing" at the TCR-peptide-MHC interface to accommodate the peptide antigen explains previously observed incongruences in this well-studied system and has important implications for future therapeutic approaches. Finally, this study expands upon the mechanisms by which molecular plasticity can influence antigen recognition by T cells.

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Primary Citation of related structures