ISDA

Deposition Date 2017-10-04

Release Date 2019-04-10

Last Version Date 2024-01-17

Entry Detail

PDB ID:

6ENG

Keywords:

ISOMERASE

Title:

Crystal structure of the 43K ATPase domain of Escherichia coli gyrase B in complex with an aminocoumarin

Biological Source:

Source Organism:

Escherichia coli K-12 (Taxon ID: 83333)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.30 Å

R-Value Free:

0.25

R-Value Work:

0.19

R-Value Observed:

0.20

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA gyrase subunit B
Gene (Uniprot):gyrB
Chain IDs:A, B
Chain Length:396
Number of Molecules:2
Biological Source:Escherichia coli K-12

UniProt ID:P0AES6 Pfam ID:PF02518, PF00204 EC:5.6.2.2

Ligand Molecules

BHW

PG4

PO4

Primary Citation

Structural Basis for DNA Gyrase Interaction with Coumermycin A1.

Vanden Broeck, A, McEwen, A.G, Chebaro, Y, Potier, N, Lamour, V.Show

J.Med.Chem. 62 4225 4231 (2019)

PMID: 30920824 DOI: 10.1021/acs.jmedchem.8b01928

Abstact

Coumermycin A1 is a natural aminocoumarin that inhibits bacterial DNA gyrase, a member of the GHKL proteins superfamily. We report here the first cocrystal structures of gyrase B bound to coumermycin A1, revealing that one coumermycin A1 molecule traps simultaneously two ATP-binding sites. The inhibited dimers from different species adopt distinct sequence-dependent conformations, alternative to the ATP-bound form. These structures provide a basis for the rational development of coumermycin A1 derivatives for antibiotherapy and biotechnology applications.

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