6ELA image
Entry Detail
PDB ID:
6ELA
Keywords:
Title:
Crystal structure of MMP12 in complex with inhibitor BE4.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-09-28
Release Date:
2018-05-16
Method Details:
Experimental Method:
Resolution:
1.49 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Macrophage metalloelastase
Mutations:F171D, K241A
Chain IDs:A, B, C, D
Chain Length:159
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Development of Thioaryl-Based Matrix Metalloproteinase-12 Inhibitors with Alternative Zinc-Binding Groups: Synthesis, Potentiometric, NMR, and Crystallographic Studies.
J. Med. Chem. 61 4421 4435 (2018)
PMID: 29727184 DOI: 10.1021/acs.jmedchem.8b00096

Abstact

Matrix metalloproteinase-12 (MMP-12) selective inhibitors could play a role in the treatment of lung inflammatory and cardiovascular diseases. In the present study, the previously reported 4-methoxybiphenylsulfonyl hydroxamate and carboxylate based inhibitors (1b and 2b) were modified to enhance their selectivity for MMP-12. In the newly synthesized thioaryl derivatives, the nature of the zinc binding group (ZBG) and the sulfur oxidation state were changed. Biological assays carried out in vitro on human MMPs with the resulting compounds led to identification of a sulfide, 4a, bearing an N-1-hydroxypiperidine-2,6-dione (HPD) group as new ZBG. Compound 4a is a promising hit compound since it displayed a nanomolar affinity for MMP-12 with a marked selectivity over MMP-9, MMP-1, and MMP-14. Solution complexation studies with Zn2+ were performed to characterize the chelating abilities of the new compounds and confirmed the bidentate binding mode of HPD derivatives. X-ray crystallography studies using MMP-12 and MMP-9 catalytic domains were carried out to rationalize the biological results.

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