6EKZ image
Deposition Date 2017-09-27
Release Date 2018-12-12
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6EKZ
Keywords:
Title:
Direct-evolutioned unspecific peroxygenase from Agrocybe aegerita, in complex with propranolol
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.08 Å
R-Value Free:
0.16
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Aromatic peroxygenase
Gene (Uniprot):APO1
Mutations:V57A, L67F, V75I, I248V, F311L
Chain IDs:A
Chain Length:328
Number of Molecules:1
Biological Source:Agrocybe aegerita
Primary Citation
Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase.
Acs Chem.Biol. 13 3259 3268 (2018)
PMID: 30376293 DOI: 10.1021/acschembio.8b00500

Abstact

Because of their minimal requirements, substrate promiscuity and product selectivity, fungal peroxygenases are now considered to be the jewel in the crown of C-H oxyfunctionalization biocatalysts. In this work, the crystal structure of the first laboratory-evolved peroxygenase expressed by yeast was determined at a resolution of 1.5 Å. Notable differences were detected between the evolved and native peroxygenase from Agrocybe aegerita, including the presence of a full N-terminus and a broader heme access channel due to the mutations that accumulated through directed evolution. Further mutagenesis and soaking experiments with a palette of peroxygenative and peroxidative substrates suggested dynamic trafficking through the heme channel as the main driving force for the exceptional substrate promiscuity of peroxygenase. Accordingly, this study provides the first structural evidence at an atomic level regarding the mode of substrate binding for this versatile biocatalyst, which is discussed within a biological and chemical context.

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