6EJ8 image
Entry Detail
PDB ID:
6EJ8
Keywords:
Title:
Human Xylosyltransferase 1 in complex with peptide QEEEGSGGGQGG
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-09-20
Release Date:
2018-05-02
Method Details:
Experimental Method:
Resolution:
2.09 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Xylosyltransferase 1
Chain IDs:A
Chain Length:755
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Protein AMBP
Mutations:L220G, V221G
Chain IDs:B
Chain Length:12
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1.
Structure 26 801 809.e3 (2018)
PMID: 29681470 DOI: 10.1016/j.str.2018.03.014

Abstact

Proteoglycans (PGs) are essential components of the animal extracellular matrix and are required for cell adhesion, migration, signaling, and immune function. PGs are composed of a core protein and long glycosaminoglycan (GAG) chains, which often specify PG function. GAG biosynthesis is initiated by peptide O-xylosyltransferases, which transfer xylose onto selected serine residues in the core proteins. We have determined crystal structures of human xylosyltransferase 1 (XT1) in complex with the sugar donor, UDP-xylose, and various acceptor peptides. The structures reveal unique active-site features that, in conjunction with functional experiments, explain the substrate specificity of XT1. A constriction within the peptide binding cleft requires the acceptor serine to be followed by glycine or alanine. The remainder of the cleft can accommodate a wide variety of sequences, but with a general preference for acidic residues. These findings provide a framework for understanding the selectivity of GAG attachment.

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