6EHQ image
Deposition Date 2017-09-14
Release Date 2018-04-18
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6EHQ
Keywords:
Title:
E. coli Hydrogenase-2 (as isolated form).
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hydrogenase-2 large chain
Gene (Uniprot):hybC
Chain IDs:B (auth: L), D (auth: M)
Chain Length:552
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Molecule:Hydrogenase-2 small chain
Gene (Uniprot):hybO
Chain IDs:A (auth: S), C (auth: T)
Chain Length:300
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
The structure of hydrogenase-2 fromEscherichia coli: implications for H2-driven proton pumping.
Biochem. J. 475 1353 1370 (2018)
PMID: 29555844 DOI: 10.1042/BCJ20180053

Abstact

Under anaerobic conditions, Escherichia coli is able to metabolize molecular hydrogen via the action of several [NiFe]-hydrogenase enzymes. Hydrogenase-2, which is typically present in cells at low levels during anaerobic respiration, is a periplasmic-facing membrane-bound complex that functions as a proton pump to convert energy from hydrogen (H2) oxidation into a proton gradient; consequently, its structure is of great interest. Empirically, the complex consists of a tightly bound core catalytic module, comprising large (HybC) and small (HybO) subunits, which is attached to an Fe-S protein (HybA) and an integral membrane protein (HybB). To date, efforts to gain a more detailed picture have been thwarted by low native expression levels of Hydrogenase-2 and the labile interaction between HybOC and HybA/HybB subunits. In the present paper, we describe a new overexpression system that has facilitated the determination of high-resolution crystal structures of HybOC and, hence, a prediction of the quaternary structure of the HybOCAB complex.

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