6EHJ image
Deposition Date 2017-09-13
Release Date 2019-03-27
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6EHJ
Keywords:
Title:
Human N-myristoyltransferase (NMT1) with Myristoyl-CoA and peptide bound
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycylpeptide N-tetradecanoyltransferase 1
Gene (Uniprot):NMT1
Chain IDs:A, B
Chain Length:391
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
High-resolution snapshots of human N-myristoyltransferase in action illuminate a mechanism promoting N-terminal Lys and Gly myristoylation.
Nat Commun 11 1132 1132 (2020)
PMID: 32111831 DOI: 10.1038/s41467-020-14847-3

Abstact

The promising drug target N-myristoyltransferase (NMT) catalyses an essential protein modification thought to occur exclusively at N-terminal glycines (Gly). Here, we present high-resolution human NMT1 structures co-crystallised with reactive cognate lipid and peptide substrates, revealing high-resolution snapshots of the entire catalytic mechanism from the initial to final reaction states. Structural comparisons, together with biochemical analysis, provide unforeseen details about how NMT1 reaches a catalytically competent conformation in which the reactive groups are brought into close proximity to enable catalysis. We demonstrate that this mechanism further supports efficient and unprecedented myristoylation of an N-terminal lysine side chain, providing evidence that NMT acts both as N-terminal-lysine and glycine myristoyltransferase.

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Primary Citation of related structures
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