6EG2 image
Deposition Date 2018-08-17
Release Date 2018-10-31
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6EG2
Title:
Crystal structure of human BRM in complex with compound 16
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.98 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Maltose/maltodextrin-binding periplasmic protein,Probable global transcription activator SNF2L2
Gene (Uniprot):SMARCA2
Chain IDs:A
Chain Length:621
Number of Molecules:1
Biological Source:Escherichia coli O157:H7, Homo sapiens
Primary Citation
Discovery of Orally Active Inhibitors of Brahma Homolog (BRM)/SMARCA2 ATPase Activity for the Treatment of Brahma Related Gene 1 (BRG1)/SMARCA4-Mutant Cancers.
J. Med. Chem. 61 10155 10172 (2018)
PMID: 30339381 DOI: 10.1021/acs.jmedchem.8b01318

Abstact

SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily A member 2 (SMARCA2), also known as Brahma homologue (BRM), is a Snf2-family DNA-dependent ATPase. BRM and its close homologue Brahma-related gene 1 (BRG1), also known as SMARCA4, are mutually exclusive ATPases of the large ATP-dependent SWI/SNF chromatin-remodeling complexes involved in transcriptional regulation of gene expression. No small molecules have been reported that modulate SWI/SNF chromatin-remodeling activity via inhibition of its ATPase activity, an important goal given the well-established dependence of BRG1-deficient cancers on BRM. Here, we describe allosteric dual BRM and BRG1 inhibitors that downregulate BRM-dependent gene expression and show antiproliferative activity in a BRG1-mutant-lung-tumor xenograft model upon oral administration. These compounds represent useful tools for understanding the functions of BRM in BRG1-loss-of-function settings and should enable probing the role of SWI/SNF functions more broadly in different cancer contexts and those of other diseases.

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Primary Citation of related structures