6EER image
Deposition Date 2018-08-15
Release Date 2019-01-16
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6EER
Title:
Structure of glycine-bound GoxA from Pseudoalteromonas luteoviolacea
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.82 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GoxA
Gene (Uniprot):N475_19905
Chain IDs:A, B, C, D
Chain Length:816
Number of Molecules:4
Biological Source:Pseudoalteromonas luteoviolacea DSM 6061
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TNQ A TRP modified residue
Primary Citation
Structural and Spectroscopic Characterization of a Product Schiff Base Intermediate in the Reaction of the Quinoprotein Glycine Oxidase, GoxA.
Biochemistry 58 706 713 (2019)
PMID: 30605596 DOI: 10.1021/acs.biochem.8b01145

Abstact

The LodA-like proteins make up a recently identified family of enzymes that rely on a cysteine tryptophylquinone cofactor for catalysis. They differ from other tryptophylquinone enzymes in that they are oxidases rather than dehydrogenases. GoxA is a member of this family that catalyzes the oxidative deamination of glycine. Our previous work with GoxA from Pseudoalteromonas luteoviolacea demonstrated that this protein forms a stable intermediate upon anaerobic incubation with glycine. The spectroscopic properties of this species were unique among those identified for tryptophylquinone enzymes characterized to date. Here we use X-ray crystallography and resonance Raman spectroscopy to identify the GoxA catalytic intermediate as a product Schiff base. Structural work additionally highlights features of the active site pocket that confer substrate specificity, intermediate stabilization, and catalytic activity. The unusual properties of GoxA are discussed within the context of the other tryptophylquinone enzymes.

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