6E9D image
Deposition Date 2018-07-31
Release Date 2018-08-15
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6E9D
Title:
Sub-2 Angstrom Ewald Curvature-Corrected Single-Particle Cryo-EM Reconstruction of AAV-2 L336C
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.86 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP1
Gene (Uniprot):VP1
Mutations:L336C
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA (auth: 1), BA (auth: 2), CA (auth: 3), DA (auth: 4), EA (auth: 5), FA (auth: 6), GA (auth: a), HA (auth: b), IA (auth: c), JA (auth: d), KA (auth: e), LA (auth: f), MA (auth: g), NA (auth: h), OA (auth: i), PA (auth: j), QA (auth: k), RA (auth: l), SA (auth: m), TA (auth: n), UA (auth: o), VA (auth: p), WA (auth: q), XA (auth: r), YA (auth: s), ZA (auth: t), AB (auth: u), BB (auth: v), CB (auth: w), DB (auth: x), EB (auth: y), FB (auth: z), GB (auth: 7), HB (auth: 8)
Chain Length:735
Number of Molecules:60
Biological Source:Adeno-associated virus 2 Srivastava/1982
Primary Citation
Sub-2 angstrom Ewald curvature corrected structure of an AAV2 capsid variant.
Nat Commun 9 3628 3628 (2018)
PMID: 30194371 DOI: 10.1038/s41467-018-06076-6

Abstact

Single-particle cryogenic electron microscopy (cryo-EM) provides a powerful methodology for structural biologists, but the resolutions typically attained with experimentally determined structures have lagged behind microscope capabilities. Here, we exploit several technical advances to improve resolution, including per-particle contrast transfer function (CTF) refinement and correction for Ewald sphere curvature. The latter is demonstrated with several experimental samples and should become more standard as resolutions increase or at lower microscope accelerating voltages. The combined application of the described methods to micrographs recorded on a Titan Krios enables structure determination at ~1.86-Å resolution of an adeno-associated virus serotype 2 variant (AAV2), an important gene-delivery vehicle. The resulting structural details provide an improved model for understanding the biology of AAV that will guide future vector development for gene therapy.

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Primary Citation of related structures