6E88 image
Deposition Date 2018-07-27
Release Date 2018-10-10
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6E88
Title:
Cryo-EM structure of C. elegans GDP-microtubule
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.80 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-2 chain
Gene (Uniprot):tba-2
Chain IDs:A, C, E (auth: H), G (auth: L), I, K (auth: M)
Chain Length:434
Number of Molecules:6
Biological Source:Caenorhabditis elegans
Polymer Type:polypeptide(L)
Molecule:Tubulin beta-2 chain
Gene (Uniprot):tbb-2
Chain IDs:B, D, F (auth: J), H (auth: N), J (auth: K), L (auth: O)
Chain Length:426
Number of Molecules:6
Biological Source:Caenorhabditis elegans
Primary Citation
The Structure and Dynamics of C. elegans Tubulin Reveals the Mechanistic Basis of Microtubule Growth.
Dev. Cell 47 191 ? (2018)
PMID: 30245157 DOI: 10.1016/j.devcel.2018.08.023

Abstact

The dynamic instability of microtubules is a conserved and fundamental mechanism in eukaryotes. Yet microtubules from different species diverge in their growth rates, lattice structures, and responses to GTP hydrolysis. Therefore, we do not know what limits microtubule growth, what determines microtubule structure, or whether the mechanisms of dynamic instability are universal. Here, we studied microtubules from the nematode C. elegans, which have strikingly fast growth rates and non-canonical lattices in vivo. Using a reconstitution approach, we discovered that C. elegans microtubules combine intrinsically fast growth with very frequent catastrophes. We solved the structure of C. elegans microtubules to 4.8 Å and discovered sequence divergence in the lateral contact loops, one of which is ordered in C. elegans but unresolved in other species. We provide direct evidence that C. elegans tubulin has a higher free energy in solution and propose a model wherein the ordering of lateral contact loops activates tubulin for growth.

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