6E59 image
Deposition Date 2018-07-19
Release Date 2018-12-12
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6E59
Title:
Crystal structure of the human NK1 tachykinin receptor
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.30
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
C 1 2 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Substance-P receptor, GlgA glycogen synthase, Substance-P receptor chimera
Gene (Uniprot):TACR1, PAB2292
Chain IDs:A
Chain Length:542
Number of Molecules:1
Biological Source:Homo sapiens, Pyrococcus abyssi (strain GE5 / Orsay)
Ligand Molecules
Primary Citation
Crystal structure of the human NK1tachykinin receptor.
Proc. Natl. Acad. Sci. U.S.A. 115 13264 13269 (2018)
PMID: 30538204 DOI: 10.1073/pnas.1812717115

Abstact

The NK1 tachykinin G-protein-coupled receptor (GPCR) binds substance P, the first neuropeptide to be discovered in mammals. Through activation of NK1R, substance P modulates a wide variety of physiological and disease processes including nociception, inflammation, and depression. Human NK1R (hNK1R) modulators have shown promise in clinical trials for migraine, depression, and emesis. However, the only currently approved drugs targeting hNK1R are inhibitors for chemotherapy-induced nausea and vomiting (CINV). To better understand the molecular basis of ligand recognition and selectivity, we solved the crystal structure of hNK1R bound to the inhibitor L760735, a close analog of the drug aprepitant. Our crystal structure reveals the basis for antagonist interaction in the deep and narrow orthosteric pocket of the receptor. We used our structure as a template for computational docking and molecular-dynamics simulations to dissect the energetic importance of binding pocket interactions and model the binding of aprepitant. The structure of hNK1R is a valuable tool in the further development of tachykinin receptor modulators for multiple clinical applications.

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Primary Citation of related structures