6E4U image
Deposition Date 2018-07-18
Release Date 2018-08-08
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6E4U
Keywords:
Title:
Structure of AMPK bound to activator
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.27 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:5'-AMP-activated protein kinase catalytic subunit alpha-1
Gene (Uniprot):Prkaa1
Chain IDs:A
Chain Length:503
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:5'-AMP-activated protein kinase subunit beta-1
Gene (Uniprot):Prkab1
Chain IDs:B
Chain Length:204
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:5'-AMP-activated protein kinase subunit gamma-1
Gene (Uniprot):Prkag1
Chain IDs:C
Chain Length:330
Number of Molecules:1
Biological Source:Rattus norvegicus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP B SER modified residue
TPO A THR modified residue
Primary Citation
Acyl Glucuronide Metabolites of 6-Chloro-5-[4-(1-hydroxycyclobutyl)phenyl]-1 H-indole-3-carboxylic Acid (PF-06409577) and Related Indole-3-carboxylic Acid Derivatives are Direct Activators of Adenosine Monophosphate-Activated Protein Kinase (AMPK).
J. Med. Chem. 61 7273 7288 (2018)
PMID: 30036059 DOI: 10.1021/acs.jmedchem.8b00807

Abstact

Studies on indole-3-carboxylic acid derivatives as direct activators of human adenosine monophosphate-activated protein kinase (AMPK) α1β1γ1 isoform have culminated in the identification of PF-06409577 (1), PF-06885249 (2), and PF-06679142 (3) as potential clinical candidates. Compounds 1-3 are primarily cleared in animals and humans via glucuronidation. Herein, we describe the biosynthetic preparation, purification, and structural characterization of the glucuronide conjugates of 1-3. Spectral characterization of the purified glucuronides M1, M2, and M3 indicated that they were acyl glucuronide derivatives. In vitro pharmacological evaluation revealed that all three acyl glucuronides retained selective activation of β1-containing AMPK isoforms. Inhibition of de novo lipogenesis with representative parent carboxylic acids and their respective acyl glucuronide conjugates in human hepatocytes demonstrated their propensity to activate cellular AMPK. Cocrystallization of the AMPK α1β1γ1 isoform with 1-3 and M1-M3 provided molecular insights into the structural basis for AMPK activation by the glucuronide conjugates.

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Primary Citation of related structures