6E4D image
Deposition Date 2018-07-17
Release Date 2019-09-11
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6E4D
Title:
Atomic structure of Mycobacterium tuberculosis DppA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Periplasmic dipeptide-binding lipoprotein DPPA
Mutations:R179A
Chain IDs:A
Chain Length:510
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Molecule:VAL-VAL-VAL-ALA
Chain IDs:B (auth: F)
Chain Length:4
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Heme and hemoglobin utilization by Mycobacterium tuberculosis.
Nat Commun 10 4260 4260 (2019)
PMID: 31534126 DOI: 10.1038/s41467-019-12109-5

Abstact

Iron is essential for growth of Mycobacterium tuberculosis (Mtb), but most iron in the human body is stored in heme within hemoglobin. Here, we demonstrate that the substrate-binding protein DppA of the inner membrane Dpp transporter is required for heme and hemoglobin utilization by Mtb. The 1.27 Å crystal structure of DppA shows a tetrapeptide bound in the protein core and a large solvent-exposed crevice for heme binding. Mutation of arginine 179 in this cleft eliminates heme binding to DppA and prevents heme utilization by Mtb. The outer membrane proteins PPE36 and PPE62 are also required for heme and hemoglobin utilization, indicating that these pathways converge at the cell surface of Mtb. Albumin, the most abundant blood protein, binds heme specifically and bypasses the requirements for PPE36, PPE62 and Dpp. Thus, our study reveals albumin-dependent and -independent heme uptake pathways, highlighting the importance of iron acquisition from heme for Mtb.

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Primary Citation of related structures