6E3L image
Entry Detail
PDB ID:
6E3L
Keywords:
Title:
Interferon gamma signalling complex with IFNGR1 and IFNGR2
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-07-14
Release Date:
2019-02-27
Method Details:
Experimental Method:
Resolution:
3.80 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Interferon gamma
Chain IDs:A, B
Chain Length:148
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Interferon gamma receptor 1
Mutations:T149I, M161K, Q167K, K174N, Q182R, H205N
Chain IDs:C, D
Chain Length:242
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Interferon gamma receptor 2
Chain IDs:E, F (auth: I)
Chain Length:233
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure of the IFN gamma receptor complex guides design of biased agonists.
Nature 567 56 60 (2019)
PMID: 30814731 DOI: 10.1038/s41586-019-0988-7

Abstact

The cytokine interferon-γ (IFNγ) is a central coordinator of innate and adaptive immunity, but its highly pleiotropic actions have diminished its prospects for use as an immunotherapeutic agent. Here, we took a structure-based approach to decoupling IFNγ pleiotropy. We engineered an affinity-enhanced variant of the ligand-binding chain of the IFNγ receptor IFNγR1, which enabled us to determine the crystal structure of the complete hexameric (2:2:2) IFNγ-IFNγR1-IFNγR2 signalling complex at 3.25 Å resolution. The structure reveals the mechanism underlying deficits in IFNγ responsiveness in mycobacterial disease syndrome resulting from a T168N mutation in IFNγR2, which impairs assembly of the full signalling complex. The topology of the hexameric complex offers a blueprint for engineering IFNγ variants to tune IFNγ receptor signalling output. Unexpectedly, we found that several partial IFNγ agonists exhibited biased gene-expression profiles. These biased agonists retained the ability to induce upregulation of major histocompatibility complex class I antigen expression, but exhibited impaired induction of programmed death-ligand 1 expression in a wide range of human cancer cell lines, offering a route to decoupling immunostimulatory and immunosuppressive functions of IFNγ for therapeutic applications.

Legend

Protein

Chemical

Disease

Primary Citation of related structures