6E23 image
Entry Detail
PDB ID:
6E23
Title:
Displacement of WDR5 from chromatin by a pharmacological WIN site inhibitor with picomolar affinity
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-07-10
Release Date:
2019-03-13
Method Details:
Experimental Method:
Resolution:
1.66 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:WD repeat-containing protein 5
Chain IDs:A, B
Chain Length:313
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation

Abstact

The chromatin-associated protein WDR5 is a promising target for pharmacological inhibition in cancer. Drug discovery efforts center on the blockade of the "WIN site" of WDR5, a well-defined pocket that is amenable to small molecule inhibition. Various cancer contexts have been proposed to be targets for WIN site inhibitors, but a lack of understanding of WDR5 target genes and of the primary effects of WIN site inhibitors hampers their utility. Here, by the discovery of potent WIN site inhibitors, we demonstrate that the WIN site links WDR5 to chromatin at a small cohort of loci, including a specific subset of ribosome protein genes. WIN site inhibitors rapidly displace WDR5 from chromatin and decrease the expression of associated genes, causing translational inhibition, nucleolar stress, and p53 induction. Our studies define a mode by which WDR5 engages chromatin and forecast that WIN site blockade could have utility against multiple cancer types.

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