6DZM image
Deposition Date 2018-07-05
Release Date 2018-09-12
Last Version Date 2025-05-14
Entry Detail
PDB ID:
6DZM
Keywords:
Title:
Bundibugyo virus GP (mucin-deleted) in complex with pan-ebolavirus human antibody ADI-15878 Fab
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.29 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bundibugyo virus GP1
Gene (Uniprot):GP
Chain IDs:A, E (auth: B), I (auth: C)
Chain Length:311
Number of Molecules:3
Biological Source:Bundibugyo ebolavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bundibugyo virus GP2
Gene (Uniprot):GP
Chain IDs:B (auth: D), F (auth: E), J (auth: F)
Chain Length:177
Number of Molecules:3
Biological Source:Bundibugyo ebolavirus
Polymer Type:polypeptide(L)
Molecule:Antibody ADI-15878 Fab, heavy chain
Chain IDs:D (auth: G), H (auth: I), L (auth: J)
Chain Length:120
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody ADI-15878 Fab, light chain
Chain IDs:C (auth: H), G (auth: K), K (auth: L)
Chain Length:106
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural Basis of Pan-Ebolavirus Neutralization by an Antibody Targeting the Glycoprotein Fusion Loop.
Cell Rep 24 2723 2732.e4 (2018)
PMID: 30184505 DOI: 10.1016/j.celrep.2018.08.009

Abstact

Monoclonal antibodies (mAbs) with pan-ebolavirus cross-reactivity are highly desirable, but development of such mAbs is limited by a lack of a molecular understanding of cross-reactive epitopes. The antibody ADI-15878 was previously identified from a human survivor of Ebola virus Makona variant (EBOV/Mak) infection. This mAb demonstrated potent neutralizing activity against all known ebolaviruses and provided protection in rodent and ferret models against three ebolavirus species. Here, we describe the unliganded crystal structure of ADI-15878 as well as the cryo-EM structures of ADI-15878 in complex with the EBOV/Mak and Bundibugyo virus (BDBV) glycoproteins (GPs). ADI-15878 binds through an induced-fit mechanism by targeting highly conserved residues in the internal fusion loop (IFL), bridging across GP protomers via the heptad repeat 1 (HR1) region. Our structures provide a more complete description of the ebolavirus immunogenic landscape, as well as a molecular basis for how rare but potent antibodies target conserved filoviral fusion machinery.

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Protein

Chemical

Disease

Primary Citation of related structures
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