6DYX image
Deposition Date 2018-07-02
Release Date 2019-04-03
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6DYX
Keywords:
Title:
Structure of VHH R419 isolated from a pre-immune phage display library
Biological Source:
Source Organism:
Vicugna pacos (Taxon ID: 30538)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VHH R419
Chain IDs:A (auth: D)
Chain Length:124
Number of Molecules:1
Biological Source:Vicugna pacos
Primary Citation
Structure of a VHH isolated from a naive phage display library.
BMC Res Notes 12 154 154 (2019)
PMID: 30890176 DOI: 10.1186/s13104-019-4197-0

Abstact

OBJECTIVE To determine the X-ray structure and biophysical properties of a Camelid VHH isolated from a naïve phage display library. RESULTS Single domain antibodies (VHH) derived from the unique immune system of the Camelidae family have gained traction as useful tools for biotechnology as well as a source of potentially novel therapeutics. Here we report the structure and biophysical characterization of a VHH originally isolated from a naïve camelid phage display library. VHH R419 has a melting temperate of 66 °C and was found to be a monomer in solution. The protein crystallized in space group P6522 and the structure was solved by molecular replacement to a resolution of 1.5 Å. The structure revealed a flat paratope with CDR loops that could be classified into existing canonical loop structures. A combination of high expression yield, stability and rapid crystallization might make R419 into a candidate scaffold for CDR grafting and homology modeling.

Legend

Protein

Chemical

Disease

Primary Citation of related structures