6DYR image
Entry Detail
PDB ID:
6DYR
Title:
C-terminal condensation domain of Ebony in complex with Carcinine
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-07-02
Release Date:
2019-01-30
Method Details:
Experimental Method:
Resolution:
2.45 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ebony
Chain IDs:A
Chain Length:223
Number of Molecules:1
Biological Source:Drosophila melanogaster
Ligand Molecules
Primary Citation
Drosophila melanogasternonribosomal peptide synthetase Ebony encodes an atypical condensation domain.
Proc. Natl. Acad. Sci. U.S.A. 116 2913 2918 (2019)
PMID: 30705105 DOI: 10.1073/pnas.1811194116

Abstact

The protein Ebony from Drosophila melanogaster plays a central role in the regulation of histamine and dopamine in various tissues through condensation of these amines with β-alanine. Ebony is a rare example of a nonribosomal peptide synthetase (NRPS) from a higher eukaryote and contains a C-terminal sequence that does not correspond to any previously characterized NRPS domain. We have structurally characterized this C-terminal domain and have discovered that it adopts the aryl-alkylamine-N-acetyl transferase (AANAT) fold, which is unprecedented in NRPS biology. Through analysis of ligand-bound structures, activity assays, and binding measurements, we have determined how this atypical condensation domain is able to provide selectivity for both the carrier protein-bound amino acid and the amine substrates, a situation that remains unclear for standard condensation domains identified to date from NRPS assembly lines. These results demonstrate that the C terminus of Ebony encodes a eukaryotic example of an alternative type of NRPS condensation domain; they also illustrate how the catalytic components of such assembly lines are significantly more diverse than a minimal set of conserved functional domains.

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Primary Citation of related structures