6DYL image
Entry Detail
PDB ID:
6DYL
Title:
Vanadyl-bound structure of the engineered cyt b562 variant, CH3Y*
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-07-01
Release Date:
2019-04-24
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Soluble cytochrome b562
Mutations:M7W, K59W, I67H, G70Y, Q71H, T96C, T97H, Y101A, H102I, R106L
Chain IDs:A, B (auth: C), C (auth: E), D (auth: G)
Chain Length:106
Number of Molecules:4
Biological Source:Escherichia coli
Primary Citation
An efficient, step-economical strategy for the design of functional metalloproteins.
Nat.Chem. 11 434 441 (2019)
PMID: 30778140 DOI: 10.1038/s41557-019-0218-9

Abstact

The bottom-up design and construction of functional metalloproteins remains a formidable task in biomolecular design. Although numerous strategies have been used to create new metalloproteins, pre-existing knowledge of the tertiary and quaternary protein structure is often required to generate suitable platforms for robust metal coordination and activity. Here we report an alternative and easily implemented approach (metal active sites by covalent tethering or MASCoT) in which folded protein building blocks are linked by a single disulfide bond to create diverse metal coordination environments within evolutionarily naive protein-protein interfaces. Metalloproteins generated using this strategy uniformly bind a wide array of first-row transition metal ions (MnII, FeII, CoII, NiII, CuII, ZnII and vanadyl) with physiologically relevant thermodynamic affinities (dissociation constants ranging from 700 nM for MnII to 50 fM for CuII). MASCoT readily affords coordinatively unsaturated metal centres-including a penta-His-coordinated non-haem Fe site-and well-defined binding pockets that can accommodate modifications and enable coordination of exogenous ligands such as nitric oxide to the interfacial metal centre.

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