6DWO image
Deposition Date 2018-06-26
Release Date 2019-10-30
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6DWO
Keywords:
Title:
Crystal structure of alpha-1-2-mannosidase from Enterococcus faecalis V583
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-1,2-mannosidase
Gene (Uniprot):EF_2217
Chain IDs:A, B, C, D
Chain Length:721
Number of Molecules:4
Biological Source:Enterococcus faecalis (strain ATCC 700802 / V583)
Primary Citation
Enterococcus faecalis alpha 1-2-mannosidase (EfMan-I): an efficient catalyst for glycoprotein N-glycan modification.
Febs Lett. 594 439 451 (2020)
PMID: 31552675 DOI: 10.1002/1873-3468.13618

Abstact

While multiple α 1-2-mannosidases are necessary for glycoprotein N-glycan maturation in vertebrates, a single bacterial α1-2-mannosidase can be sufficient to cleave all α1-2-linked mannose residues in host glycoprotein N-glycans. We report here the characterization and crystal structure of a new α1-2-mannosidase (EfMan-I) from Enterococcus faecalis, a Gram-positive opportunistic human pathogen. EfMan-I catalyzes the cleavage of α1-2-mannose from not only oligomannoses but also high-mannose-type N-glycans on glycoproteins. Its 2.15 Å resolution crystal structure reveals a two-domain enzyme fold similar to other CAZy GH92 mannosidases. An unexpected potassium ion was observed bridging two domains near the active site. These findings support EfMan-I as an effective catalyst for in vitro N-glycan modification of glycoproteins with high-mannose-type N-glycans.

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Primary Citation of related structures
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