ISDA: 6DT3

Deposition Date 2018-06-15

Release Date 2018-06-27

Last Version Date 2024-10-23

Entry Detail

PDB ID:

6DT3

Keywords:

HYDROLASE

Title:

1.2 Angstrom Resolution Crystal Structure of Nucleoside Triphosphatase NudI from Klebsiella pneumoniae in Complex with HEPES

Biological Source:

Source Organism:

Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (Taxon ID: 484021)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.20 Å

R-Value Free:

0.18

R-Value Work:

0.15

R-Value Observed:

0.15

Space Group:

P 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Nucleoside triphosphatase NudI
Gene (Uniprot):nudI
Chain IDs:A, B
Chain Length:144
Number of Molecules:2
Biological Source:Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044

UniProt ID:A0A1W1Q5B1 Pfam ID:PF00293

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
MSE	A	MET	modified residue

Ligand Molecules

EPE

Primary Citation

A Structural Systems Biology Approach to High-Risk CG23 Klebsiella pneumoniae.

Inniss, N.L, Kochan, T.J, Minasov, G, Wawrzak, Z, Chang, C, Tan, K, Shuvalova, L, Kiryukhina, O, Pshenychnyi, S, Wu, R, Dubrovska, I, Babnigg, G, Endres, M, Anderson, W.F, Hauser, A.R, Joachimiak, A, Satchell, K.J.F.Show

Microbiol Resour Announc 12 e0101322 e0101322 (2023)

PMID: 36695589 DOI: 10.1128/mra.01013-22

Abstact

Klebsiella pneumoniae is a leading cause of antibiotic-resistant-associated deaths in the world. Here, we report the deposition of 14 structures of enzymes from both the core and accessory genomes of sequence type 23 (ST23) K1 hypervirulent K. pneumoniae.

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Disease

Primary Citation of related structures