6DRU image
Entry Detail
PDB ID:
6DRU
Keywords:
Title:
Xylosidase from Aspergillus niger
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-06-13
Release Date:
2018-08-22
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glycosyl hydrolases family 31 family protein
Chain IDs:A, B
Chain Length:718
Number of Molecules:2
Biological Source:Aspergillus niger
Primary Citation
Crystal Structure of alpha-Xylosidase fromAspergillus nigerin Complex with a Hydrolyzed Xyloglucan Product and New Insights in Accurately Predicting Substrate Specificities of GH31 Family Glycosidases.
Acs Sustain Chem Eng 8 2540 2547 (2020)
PMID: 32161692 DOI: 10.1021/acssuschemeng.9b07073

Abstact

Glycoside hydrolase family 31 (GH31) enzymes show both highly conserved folds and catalytic residues. Yet different members of GH31 show very different substrate specificities, and it is not obvious how these specificities arise from the protein sequences. The fungal α-xylosidase, AxlA, was originally isolated from a commercial enzyme mixture secreted by Aspergillus niger and was reported to have potential as a catalytic component in biomass deconstruction in the biofuel industry. We report here the crystal structure of AxlA in complex with its catalytic product, a hydrolyzed xyloglucan oligosaccharide. On the basis of our new structure, we provide the structural basis for AxlA's role in xyloglucan utilization and, more importantly, a new procedure to predict and differentiate C5 vs C6 sugar specific activities based on protein sequences of the functionally diverse GH31 family enzymes.

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Primary Citation of related structures