6DQ7 image
Deposition Date 2018-06-10
Release Date 2019-06-12
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6DQ7
Keywords:
OXIDOREDUCTASE/INHIBITOR
Title:
LINKED KDM5A JMJ DOMAIN BOUND TO THE POTENTIAL HYDROLYSIS PRODUCT OF INHIBITOR N45 i.e. 3-((6-(4-(2-cyano-3-methylbut-2-enoyl)-1,4-diazepan-1-yl)-2-(pyridin-2-yl)pyrimidin-4-yl)amino)propanoic acid
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.85 Å
R-Value Free:
0.20
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
6DQ7 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Linked KDM5A Jmj Domain
Gene (Uniprot):KDM5A
Chain IDs:A
Chain Length:330
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P29375 Pfam ID:PF02375, PF02373 EC:1.14.11.67
Ligand Molecules
EDO
GOL
H6M
MN
Primary Citation
Structure-based Engineering of Reversible Covalent Inhibitors Against Histone Lysine Demethylase 5A
Horton, J.R, Liu, X, Woodcock, C.B, Shanks, J, Zhang, X, Rai, G, Mott, B, Jansen, D.J, Kales, S, Henderson, M.J, Pohida, K, Fang, Y, Hu, X, Jadhav, A, Maloney, D, Hall, M.D, Simeonov, A, Fu, H, Vertino, P.M, Cheng, X, Horton, J.R, Liu, X, Gale, M, Wu, L, Shanks, J.R, Zhang, X, Webber, P.J, Bell, J.S, Kales, S.C, Mott, B.T, Rai, G, Jansen, D.J, Henderson, M.J, Urban, D.J, Hall, M.D, Simeonov, A, Maloney, D.J, Johns, M.A, Fu, H, Jadhav, A, Vertino, P.M, Yan, Q, Cheng, X, Horton, J.R, Engstrom, A, Zoeller, E.L, Liu, X, Shanks, J.R, Zhang, X, Johns, M.A, Vertino, P.M, Fu, H, Cheng, X, Horton, J.R, Liu, X, Wu, L, Zhang, K, Shanks, J, Zhang, X, Rai, G, Mott, B.T, Jansen, D.J, Kales, S.C, Henderson, M.J, Pohida, K, Fang, Y, Hu, X, Jadhav, A, Maloney, D.J, Hall, M.D, Simeonov, A, Fu, H, Vertino, P.M, Yan, Q, Cheng, X.Show
To Be Published ? ? ? (?)
Primary Citation of related structures
6DQ7
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