6DO1 image
Entry Detail
PDB ID:
6DO1
Title:
Structure of nanobody-stabilized angiotensin II type 1 receptor bound to S1I8
Biological Source:
PDB Version:
Deposition Date:
2018-06-08
Release Date:
2019-01-30
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.35
R-Value Work:
0.30
R-Value Observed:
0.30
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Type-1 angiotensin II receptor,Soluble cytochrome b562 BRIL fusion protein
Chain IDs:A, B
Chain Length:425
Number of Molecules:2
Biological Source:Homo sapiens, Escherichia coli
Polymer Type:polypeptide(L)
Description:Nanobody Nb.AT110i1
Chain IDs:C, D, E, F
Chain Length:126
Number of Molecules:4
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Angiotensin-like peptide S1I8
Chain IDs:G, H
Chain Length:8
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Distinctive Activation Mechanism for Angiotensin Receptor Revealed by a Synthetic Nanobody.
Cell 176 479 490.e12 (2019)
PMID: 30639100 DOI: 10.1016/j.cell.2018.12.006

Abstact

The angiotensin II (AngII) type 1 receptor (AT1R) is a critical regulator of cardiovascular and renal function and is an important model for studies of G-protein-coupled receptor (GPCR) signaling. By stabilizing the receptor with a single-domain antibody fragment ("nanobody") discovered using a synthetic yeast-displayed library, we determined the crystal structure of active-state human AT1R bound to an AngII analog with partial agonist activity. The nanobody binds to the receptor's intracellular transducer pocket, stabilizing the large conformational changes characteristic of activated GPCRs. The peptide engages the AT1R through an extensive interface spanning from the receptor core to its extracellular face and N terminus, remodeling the ligand-binding cavity. Remarkably, the mechanism used to propagate conformational changes through the receptor diverges from other GPCRs at several key sites, highlighting the diversity of allosteric mechanisms among GPCRs. Our structure provides insight into how AngII and its analogs stimulate full or biased signaling, respectively.

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