6DGV image
Deposition Date 2018-05-18
Release Date 2019-04-03
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6DGV
Title:
iGABASnFR Fluorescent GABA Sensor precursor
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 64
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fluorescent GABA Sensor precursor
Chain IDs:A
Chain Length:568
Number of Molecules:1
Biological Source:Pseudomonas fluorescens
Primary Citation
A genetically encoded fluorescent sensor for in vivo imaging of GABA.
Nat.Methods 16 763 770 (2019)
PMID: 31308547 DOI: 10.1038/s41592-019-0471-2

Abstact

Current techniques for monitoring GABA (γ-aminobutyric acid), the primary inhibitory neurotransmitter in vertebrates, cannot follow transients in intact neural circuits. To develop a GABA sensor, we applied the design principles used to create the fluorescent glutamate receptor iGluSnFR. We used a protein derived from a previously unsequenced Pseudomonas fluorescens strain and performed structure-guided mutagenesis and library screening to obtain intensity-based GABA sensing fluorescence reporter (iGABASnFR) variants. iGABASnFR is genetically encoded, detects GABA release evoked by electric stimulation of afferent fibers in acute brain slices and produces readily detectable fluorescence increases in vivo in mice and zebrafish. We applied iGABASnFR to track mitochondrial GABA content and its modulation by an anticonvulsant, swimming-evoked, GABA-mediated transmission in zebrafish cerebellum, GABA release events during interictal spikes and seizures in awake mice, and found that GABA-mediated tone decreases during isoflurane anesthesia.

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