6DFY image
Deposition Date 2018-05-15
Release Date 2018-09-05
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6DFY
Keywords:
DNA BINDING PROTEIN/DNA
Title:
Remodeled crystal structure of DNA-bound DUX4-HD2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.62 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 41 21 2
6DFY validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Double homeobox protein 4
Gene (Uniprot):DUX4
Chain IDs:A (auth: C), D
Chain Length:64
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q9UBX2 Pfam ID:PF00046
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*AP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*GP*T)-3')
Chain IDs:B (auth: E)
Chain Length:14
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*TP*CP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*A)-3')
Chain IDs:C (auth: F)
Chain Length:14
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Comment on structural basis of DUX4/IGH-driven transactivation.
Leukemia 32 2090 2092 (2018)
PMID: 30054554 DOI: 10.1038/s41375-018-0217-7
Primary Citation of related structures
6DFY