6DFL image
Entry Detail
PDB ID:
6DFL
Keywords:
Title:
WaaP in complex with acyl carrier protein
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2018-05-15
Release Date:
2019-04-03
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lipopolysaccharide core heptose(I) kinase RfaP
Chain IDs:A
Chain Length:259
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa
Polymer Type:polypeptide(L)
Description:Acyl carrier protein
Chain IDs:B
Chain Length:72
Number of Molecules:1
Biological Source:Escherichia coli
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Acylated-acyl carrier protein stabilizes the Pseudomonas aeruginosa WaaP lipopolysaccharide heptose kinase.
Sci Rep 8 14124 14124 (2018)
PMID: 30237436 DOI: 10.1038/s41598-018-32379-1

Abstact

Phosphorylation of Pseudomonas aeruginosa lipopolysaccharide (LPS) is important for maintaining outer membrane integrity and intrinsic antibiotic resistance. We solved the crystal structure of the LPS heptose kinase WaaP, which is essential for growth of P. aeruginosa. WaaP was structurally similar to eukaryotic protein kinases and, intriguingly, was complexed with acylated-acyl carrier protein (acyl-ACP). WaaP produced by in vitro transcription-translation was insoluble unless acyl-ACP was present. WaaP variants designed to perturb the acyl-ACP interaction were less stable in cells and exhibited reduced kinase function. Mass spectrometry identified myristyl-ACP as the likely physiological binding partner for WaaP in P. aeruginosa. Together, these results demonstrate that acyl-ACP is required for WaaP protein solubility and kinase function. To the best of our knowledge, this is the first report describing acyl-ACP in the role of a cofactor necessary for the production and stability of a protein partner.

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Primary Citation of related structures