6DEY image
Deposition Date 2018-05-13
Release Date 2018-08-01
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6DEY
Keywords:
Title:
Aspartylglucosaminuria mutant structure and function
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.63 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycosylasparaginase, residues 38-178
Gene (Uniprot):BMF97_04835
Chain IDs:A, C
Chain Length:141
Number of Molecules:2
Biological Source:Elizabethkingia meningoseptica
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycosylasparaginase, residues 188-331
Gene (Uniprot):BMF97_04835
Chain IDs:B, D
Chain Length:144
Number of Molecules:2
Biological Source:Elizabethkingia meningoseptica
Primary Citation
Biochemical and structural insights into an allelic variant causing the lysosomal storage disorder - aspartylglucosaminuria.
FEBS Lett. 592 2550 2561 (2018)
PMID: 29993127 DOI: 10.1002/1873-3468.13190

Abstact

UNLABELLED Aspartylglucosaminuria (AGU) is a lysosomal storage disorder caused by defects of the hydrolase glycosylasparaginase (GA). Previously, we showed that a Canadian AGU mutation disrupts an obligatory intramolecular autoprocessing with the enzyme trapped as an inactive precursor. Here, we report biochemical and structural characterizations of a model enzyme corresponding to a Finnish AGU allele, the T234I variant. Unlike the Canadian counterpart, the Finnish variant is capable of a slow autoprocessing to generate detectible hydrolyzation activity of the natural substrate of GA. We have determined a 1.6 Å-resolution structure of the Finnish AGU model and built an enzyme-substrate complex to provide a structural basis for analyzing the negative effects of the point mutation on KM and kcat of the mature enzyme. ENZYME Glycosylasparaginase or aspartylglucosaminidase, EC3.5.1.26.

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Primary Citation of related structures