6DET image
Deposition Date 2018-05-13
Release Date 2019-03-20
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6DET
Title:
The crystal structure of Tv2483 bound to L-arginine
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tv2483
Gene (Uniprot):HMPREF1222_00896
Chain IDs:A
Chain Length:266
Number of Molecules:1
Biological Source:Treponema vincentii
Ligand Molecules
Primary Citation
Biophysical insights into a highly selective l-arginine-binding lipoprotein of a pathogenic treponeme.
Protein Sci. 27 2037 2050 (2018)
PMID: 30242931 DOI: 10.1002/pro.3510

Abstact

Biophysical and biochemical studies on the lipoproteins and other periplasmic proteins from the spirochetal species Treponema pallidum have yielded numerous insights into the functioning of the organism's peculiar membrane organization, its nutritional requirements, and intermediary metabolism. However, not all T. pallidum proteins have proven to be amenable to biophysical studies. One such recalcitrant protein is Tp0309, a putative polar-amino-acid-binding protein of an ABC transporter system. To gain further information on its possible function, a homolog of the protein from the related species T. vincentii was used as a surrogate. This protein, Tv2483, was crystallized, resulting in the determination of its crystal structure at a resolution of 1.75 Å. The protein has a typical fold for a ligand-binding protein, and a single molecule of l-arginine was bound between its two lobes. Differential scanning fluorimetry and isothermal titration calorimetry experiments confirmed that l-arginine bound to the protein with unusually high selectivity. However, further comparison to Tp0309 showed differences in key amino-acid-binding residues may impart an alternate specificity for the T. pallidum protein.

Legend

Protein

Chemical

Disease

Primary Citation of related structures